NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10030453

Scaffold Ga0209709_10030453


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10030453 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3361
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004537Metagenome / Metatranscriptome434Y
F005848Metagenome / Metatranscriptome388Y
F016399Metagenome / Metatranscriptome247Y
F032859Metagenome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0209709_1003045310F005848AGGAGMALPVQRTYAATIAALNAPVFMVDNQTTLNNFLTLTPNVLQDVVNLIDPAATQLLQYTLVKNGNATSVRCFSSSISATTAGRVPIGPVSMSSGSYQWQAVQTVGALFNGQILVRYGSPLN
Ga0209709_1003045311F016399N/APRKSMVKRRTTIRRRTSSMGRGIGSSLKTGVIGDVVKGIGAGSLVSLVMSRVAPNSSITPIASTGAAFLSGGLVGGAANLILTGGLSQLGGMFGGGASMPQEEFGV
Ga0209709_100304538F032859GAGGMSFGGGSSGGSATVAAHTHNSTLSGDGGSLSSVLSQIDDSNLYSRIVAGA
Ga0209709_100304539F004537AGGAGMPFSNSIVNNFALNSGNTPLLYPVRVICAAGATTGISFPDQFLGRAISLKITNNDSANAASYDYNLNGQFQNLAASNFSTVDNTVVNYLTIIAGAAGTVLVEAQVLPATRTEVPIEVMV
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