NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10032452

Scaffold Ga0209709_10032452


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10032452 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3224
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000245Metagenome / Metatranscriptome1468Y
F002715Metagenome / Metatranscriptome535Y
F006919Metagenome362Y

Sequences

Protein IDFamilyRBSSequence
Ga0209709_100324524F006919GGAMKTFKSYLTEFTIRSTSDIVFEVGSQGQGSSALKIPISGPMFKRIWPDTIRTTVFHVLNAEYIYDLKKLEGKKKSISAFFSMMAKQFESGIAAGGGVVAELEADVLVSARDDIMSQVDKGGRRWVEMSWFENAAGRGDGAGFQAVERDLNVLIRDLVLKHLEPILGDKARTEPEFYLWADMKRHLKDSKKLSLVIKDYFDGVEKIIKKNSEVLGSIFYGYAKSKRQTENSWDEQIVNNIKIKKLHYIPIKVDNEEEDGNIENEEQQENIDAFVEKYSSISAKRWDYSSELEIYTRKVVAKERGK
Ga0209709_100324527F000245AGGAMKTFTRLKESKLDDRLDKIVSNEIKKRKLTKFPVNATDDIKMRMKPNKPAFKFPSPNSDMMIHVFLRKMEPSKGQPKGMMAFNYQLEDK
Ga0209709_100324528F002715AGGAMPEELQSVKLEVGLLKNEVEVRGRQIETLLSKLDLTADKLQELTIEIKTLNARQGDNLRHTTSMSDEFKILHTRIGDLYDKHLIMQKEIEQRLDRLDQYKSKLMGMIIVVGGVVGTIVATAISVFLKD
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