NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10076042

Scaffold Ga0209709_10076042


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10076042 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1836
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F007052Metagenome / Metatranscriptome359Y
F011155Metagenome / Metatranscriptome294Y
F039176Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0209709_100760422F011155GGAGMLDTAVDVVGNFDVTMDNLFVIREAAFGFLTESKESPYPWMLAAAAVAGALPLALVFFGFGWIECSREAVQCGLVSI
Ga0209709_100760423F039176GGAGMEEDYELDLSLNRSLEELVGSYFEAHGAGLDLDVDSTEEDVSNYYVLENYLSDMGAI
Ga0209709_100760425F000615GAGGMCRIRCFYECSDGKMGWAEMVLSYDDDIAGFVKHWGTGGRMVTTEYIDLI
Ga0209709_100760426F007052GAGMEKNETYFVARLINKGKFLSSEIFESLEEARLWAMKEAKLLISDMEMLRSTNVGDICVEIDKHFFGYEISSEELLKNSVRV
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