NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10150974

Scaffold Ga0209709_10150974


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10150974 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1140
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F007052Metagenome / Metatranscriptome359Y
F039176Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0209709_101509741F007052N/ARLINKGKFLSSEIFESLEEARLWAMKEAKLLISDMEMLRSTNVGDICVEIDKHFFAYELDSEELLKNSVRV
Ga0209709_101509742F000615GAGGMCRLRTFYECSDGTMGWAEMVVSYDEDIAGLIKHLGTGGRMVITEYFEV
Ga0209709_101509744F039176GAGLEIDLSLNRSLEELVSSYFEAHGAGIELDEDTRPEEIDDYFVLENYLSDMGAI

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