NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209502_10114697

Scaffold Ga0209502_10114697


Overview

Basic Information
Taxon OID3300027780 Open in IMG/M
Scaffold IDGa0209502_10114697 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1345
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)79.2466Long. (o)-150.0613Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019836Metagenome / Metatranscriptome227Y
F037230Metagenome / Metatranscriptome168Y
F056896Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0209502_101146972F056896N/AMWSNCCGAEPSYLSDELCGACLDHAVFDDEDEDEDMGDTCRNGKEWNKCECC
Ga0209502_101146973F037230N/AMKNLTEEYVNIDWSGICEDFDLDSGDISPEQSFELDRALGNINEVLHNFIDQNKPTVHIGTATLTNTEHNVLMVALDHMFEHLSDMRDDLAPFEDEVTNIKRIAAVRSLQKLFKK
Ga0209502_101146975F019836N/AMQKENLKLPIKQFHRLYDLLGDLLDHESDTNDFNMENNDIELIEDIRHELFNQIPDEKTFTDYALTGRSSNPSILAGKLYKIVEQTSKHGFKLEVEDDE
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