NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209502_10283473

Scaffold Ga0209502_10283473


Overview

Basic Information
Taxon OID3300027780 Open in IMG/M
Scaffold IDGa0209502_10283473 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)720
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)79.2466Long. (o)-150.0613Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004866Metagenome420Y
F006666Metagenome / Metatranscriptome367Y

Sequences

Protein IDFamilyRBSSequence
Ga0209502_102834731F004866N/ANVSIKYQIVTYCFFNDTLISNSDLKFLTELAKEKGIELTKFCNKTVNEDIFKSAQSARNAITKAEKKGLLIKTGHNKKTIKLNPDINVQSNGLVLLDYKILGRESEKS
Ga0209502_102834732F006666N/AVNPKSHKDLRKGIADEVGVHPTVVDDFISFYYAKVRKKLSTLAYPRINIDGLGTFYLRKNKLDKAILKNKSLLGNIAKRTYNGFAQSEDIHKNIVEMESAMKQLEKDIKITKKFRNER
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