Scaffold Ga0209500

Basic Information
Taxon OID	3300027782 Open in IMG/M
Scaffold ID	Ga0209500_10000314 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027782 Open in IMG/M

Scaffold ID

Ga0209500_10000314 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	43103
Total Scaffold Genes	76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	68 (89.47%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

43103

Total Scaffold Genes

76 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

68 (89.47%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F004695	Metagenome	427	Y
F005087	Metagenome / Metatranscriptome	412	Y
F012214	Metagenome	282	Y
F026442	Metagenome / Metatranscriptome	198	Y
F040590	Metagenome	161	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_100003141	F026442	AGGA	MSYAEIEIDIIRWSEARKIIPNSTPEIQLLKAVSEI
Ga0209500_1000031430	F001915	AGGAG	MEWRLAHPLDDVDDIVEMADTIFGVEADGILTRDRNVFRKHVTVTATMQLFDKGREFLAVCRDVDTLVAYCWFDRGGYTTYANEEISNAKFHHLDLSLPVRTRVRLLNEMIDQHILWASSWGIPVICSTSIRAEHNGFMKIHKKRGFTVNGSYAWIRTENGLKDMK
Ga0209500_1000031434	F040590	GAGG	MSAYGKVISGGTAMTNGLTKGINKKLSAFADSHKRSAMLATAVGKTFNQNPLSDPHHNDVNMNAKKSFTTPKLPSKV
Ga0209500_1000031436	F001059	AGGA	MATYDIDALKEDLPTAKDLAQFVYDRTQIALDLIGKPKEDQYQVAKNALEGRKIPSEYVTDVNPYIDKRELIPEDDLAPIPERSADLPNIDSQIHYFGATNMPHPSNPQSDEKVAIDFRKYDNGTVTFQIVGPVFQVAVGERLNKFGQRVPEKYTWNDPRTGETLMKRPDGTYTERGRKLFQYCSGEKGGGIWGLIDRDLTSISSKNIVDPWA
Ga0209500_1000031439	F004695	AGGA	MLDKQNIVVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEMDGEQAAQATEMVKYMVNSKNDSYAIIRDWAQDSLLHKNGIVMVSPVREPITQYKEVEGTKDQLRVFETMAAEKGLTVKRQNMRRIDVDLQGVMQEMMAPEEDQTPQEGMDSAIRANTVYRAKYKMTGFSTSVKIKHVAQHYFVCNPTIPNIQDQDFVGFYDPMTIHECKSQFPYVDLEKLAEHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVVASAGADRYSRVIMLTTAWIRKDVDGDGEEEIVECCFSGSYVLYVKEVDFIPLAAMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQSSTPRIGVNPEFIDAEEIQRGVSAMFVLDRKFDPNKHIYEFSPMQGNLAYVQSSMERFEADKMAMIGMTSPGDVLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLRDVLYIVWKTLIQYADDYNIQQLAGVCGKGKPFMDAISMDNYEFIDRKLINIDLALGFLSEENRLTRQQLIGQAQAQFMQLMMQLDPSAPEMFAKVRRPFEDTLRVLGVKDVDAYLPTMEEAAKLAQAKSQQGPNAEQKEIQSKTDLNNAKVQESNTISALNIKKAEDIDTDNMFEALAAKRGKLSAVEID
Ga0209500_1000031445	F005087	AGGA	MALFIQSANALVSRIASWVGAIPSSIGINASSYNSSTGVITCASNPSALVLIGDFIGPNMMGPFAAVLAVSSSTITVNDPDGVWTGITYPTTILKLPSASALEIQACIQMAELKMRTIELPALRSDPYATVSPSTLTTDAQGMAPIPSDMCFPILFFQESPASNQPPGATALGPWIVYDRVGDREIIRRRMIDQLYIRPFGVPRVIRASFSEVGPNYVFTPNPGDSVVIKAYYQKTFPFLFSTTGDNLNPIVQSNGVLASFPEGYLYGTLSAYYDKNKNVEESQKWDARFDASYGLIEDQNYKGKWRGGDQHLTSEFQPRNYRYSFK
Ga0209500_1000031452	F012214	GGTGG	MSDYQRLRTPFPQMSFTPDVPSNALGPNEYNSGRNVEADVRGIKKIYGEQEILSTISNLPIFMDGGFRGEAQWVYIVATRDSSNRGRWYLITTAGISNITPGVGANPAAFLTGYTEDINITTSWVGNVFFINDGLASPMYLLPTATEIYKYDAAPDNYVWNYDIGVSATRAGFVRNFCSPNVGNILIAGNITKDYTSSGLTINYPTTVRWSQAFANTGVPATWVPTLSNVANEQEIPVRGPIVDGFFLGGNFYVCSYWDTVVFSPIAYQNSTAPIFGVRLFNQGRGLINNNCWSNTDTNVYGVDSRDIWVFNGSDFAPLGNQRVRDYFFGNLSTTYSDRIFMINNTQKNQIEIYYPDLTSSGWCNKMLSYRYDLQIWNAPKDIANACMGAEAPVYTGGVFKFASRTVTYAPAGASSKLIQTNIGNSFINSAAIPTLFERNNMVLQGSQGPVPYSSKIYIHRVLPEIAGTGTIDITLGGANSTAQPATYGQTGRVSIVTDNPWVTTQQNNVRTVSVKVESNDATDAWNLTALNWQATVVEDAF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209500_10000314

Overview

Ecosystem & Geography

Associated Families

Sequences