Scaffold Ga0209500

Basic Information
Taxon OID	3300027782 Open in IMG/M
Scaffold ID	Ga0209500_10001231 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027782 Open in IMG/M

Scaffold ID

Ga0209500_10001231 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19608
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	40 (74.07%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

19608

Total Scaffold Genes

54 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

40 (74.07%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000450	Metagenome / Metatranscriptome	1126	Y
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F002071	Metagenome / Metatranscriptome	596	Y
F034574	Metagenome / Metatranscriptome	174	Y
F038205	Metagenome / Metatranscriptome	166	Y
F038669	Metagenome / Metatranscriptome	165	Y
F043387	Metagenome / Metatranscriptome	156	Y
F051117	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_1000123113	F051117	N/A	MHDHEFKLDMDGQVTCSICGAMGDDMPNPEPTTGYGYDELKDFDMGYRDIRKNRITPFLGRSR
Ga0209500_1000123125	F038669	AGG	MSYKDTLLEPHLQKLVDLGESGTDIMHGHMKNLMYECETKLLDISELQDNPEYKYLSGRMDTLTEIYIMTYNLAFAINERTVSRG
Ga0209500_1000123129	F000450	AGGCGG	MGDRANFGFVQPNGNTIVLYGHWAGHNMLGKLADAVIKARPRWNDGSYATRIAISQMVSDEWNMETGWGLYINEIGDNEHKIAIVDFKQQTFSLHEEAPHNDLDNKVRGMNNDAIFTMDLSVFCEKYAMENILVV
Ga0209500_1000123139	F002071	AGGA	MEIGTTYTTTTSGITGVIKAIDNHPSGVNRILLDVNGTDRWTSVKA
Ga0209500_1000123145	F038205	AGGA	VGNILEILAVSCDECGGAGFIFWGDENNYDVESCDCALEIWGI
Ga0209500_1000123150	F043387	AGGAGG	MMTKWDTIQADIADAYTYLDEAEVLDKHNTEALFDEDMISMDEVIENELTLDWEAYE
Ga0209500_1000123151	F034574	GAGG	MKLTYTIWQGSLMKGRLTAKSMKEIIALVDELNEGNKTLKFEYMIHTIEQEAK
Ga0209500_100012316	F001280	GGA	MCIECGCEAVGSEAGIIPVVVTDVSRDGEAGLTLNMTSTPEQTRQFINE
Ga0209500_100012317	F001176	N/A	MSENGTGMATPPNNEPAGAVTSQEVGRKKPNQGKFRSGINGPRPATKIDTNKHGIRRETNLGSKKTGRPKKV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209500_10001231

Overview

Ecosystem & Geography

Associated Families

Sequences