Scaffold Ga0209500_10001262

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209500_10001262

Scaffold Ga0209500_10001262

Overview

Basic Information
Taxon OID	3300027782 Open in IMG/M
Scaffold ID	Ga0209500_10001262 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	19244
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (79.17%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F055551	Metagenome	138	Y
F057311	Metagenome / Metatranscriptome	136	Y
F098694	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_1000126227	F055551	GAG	MTTSSNTKPWMSDEYDMPVLENEETWSQRVIDETAVYLWLDIEREENVNKKEKDQRSN
Ga0209500_100012623	F098694	AGGAG	MIQYITDGRNGRDERVVLWRTGEYTYELDIGTGIHKKNLKFYETEYYEALDQFNAAIVNYQNVETI
Ga0209500_1000126231	F057311	N/A	MQKKSSKVKQTKLRLEIESKTRFWYPVSRNGWWIKFSTYRDRYILLMIVSKYTAQTIIRYYENEDEAVAFINFVTTCDPDELIEST

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