NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209500_10001569

Scaffold Ga0209500_10001569


Overview

Basic Information
Taxon OID3300027782 Open in IMG/M
Scaffold IDGa0209500_10001569 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17029
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (95.83%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003212Metagenome / Metatranscriptome500Y
F007691Metagenome / Metatranscriptome346Y
F018135Metagenome236Y
F093237Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209500_100015693F003212GGAGMKDRYLVTLEVETYDGDPKNWDWSHLLVNDKTRFIESQFKGRVLPTSEGESK
Ga0209500_100015694F007691GGAGMDTIEQLINEIHEDNYSHLEFDENMGGEGCECAIHTTLNTIVKYRDKGEVE
Ga0209500_100015695F093237AGGAGGMGYKYTLAEAGKMTNQELLNALLAREVAPRTIIGTGYINARQVAIEYLQGEIAKEGEGK
Ga0209500_100015696F018135AGGCGGMVFVRLPHSGAYVLYQMVGEGAGKYLFTRTYYGYTIKQAKAQFKLALKEAK
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