NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209500_10004608

Scaffold Ga0209500_10004608


Overview

Basic Information
Taxon OID3300027782 Open in IMG/M
Scaffold IDGa0209500_10004608 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9078
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075612Metagenome118Y
F078714Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0209500_100046081F078714N/AVSYAIIRVMKRKILSFTIEQPKHRAHKVLFSSNTPFKPKVVLSKKGMYVRKPKHPNSTEI
Ga0209500_1000460811F075612N/AMVAPGIKIEGGIDIGSGIDIGATPPSGLVLNLDASNYSAMPVDGTTIAGEGGYTITTLNPGGSMSWDPAEGGIFRKTVPTGTDFLTFGPDYSSTSQAYTVMMVYRSQPSTAGRLLNANSAAPDWLLGLWDSPSYVQNVFYNGSTFVGATSAADDNWQFIWATYNGNSGSQFSQSYIANSTIPTTTSGTDTSGGGFQGLRLFGRYDSPTTSSENPTSDVGLVKVWNKVLTLSQIQAQWTSYKTRFGY
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