NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209500_10004849

Scaffold Ga0209500_10004849


Overview

Basic Information
Taxon OID3300027782 Open in IMG/M
Scaffold IDGa0209500_10004849 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8840
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (38.46%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014494Metagenome / Metatranscriptome262Y
F015470Metagenome254N
F054849Metagenome139N
F058128Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0209500_1000484910F014494AGGMVTKVFECEQCGSHGKIVVKGDDHRYEDIVYCPVCSADIYEEEEFDEDE
Ga0209500_100048495F058128AGGAMDGITWFPIVAPSYANVDGILADVHAKKNEERWDEYNKQLIEKIHLRDYLYDIYLKRAHEKQIRMEIFNVSSIDLYV
Ga0209500_100048496F054849N/AMKWIIVFLLSFLSISSLSQSCDDCIGGVVATDTNTCLVSNFYNIAHSIHDPGLRHQQLSLWLTTNGNRCDSKQLILIWNRLAEWGGASDSAELRGKLLYYFSSAEERERKGKS
Ga0209500_100048497F015470N/AMKTPVKKAPVKRVAVKKPPVKKVAPTRRTKTPPAPIVIDVSSTTKSASSMLDKAIDLIKWVDSPFKLFEVILLASVFFFGYFAWDSRTVILDAITQSSKVTNLKEVNHLIPVAASLQKDLEAVTVVVHKAALVVNTRTTMLSFGPKGRDNTLDGLVTSLFNKDPGRNAAIIGMLNGEVTCDKLEGTSKSSEWEAKQGATFICRGGIPPEVGDFDGYVAVGFKTEPADLSVVKTRINLATADMSQ
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