NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209500_10007813

Scaffold Ga0209500_10007813


Overview

Basic Information
Taxon OID3300027782 Open in IMG/M
Scaffold IDGa0209500_10007813 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6743
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023790Metagenome208N
F059905Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0209500_100078136F023790N/AMKMLLQSKRFETTTILEDNKTIYVVTTRGKLLSDNTPSKAITFDFRRLDRKKLTKKENKIGDQIFNDIIKDKHDHNRVNNVNSSPSSYS
Ga0209500_100078139F059905N/AMKNDCKNAIRYLVSKTYETYAKYKNSISVLSLPGESWEFENHILNHQDYRNCIQQIPMDLQLLCFEKSFRTFSVSNLLDKNKDNNTQYINDKITLDHLKLLKNKNKFLWFDFCGNPSVESLKFLNSSFIQGEKTCAIFTFTLLWRKRDNLPLEIDNLSKSNTNQEAIQIYFKQALKDLNAKSEGYSNKITLLWQYTYISSRAPMICLCVTNDSTLKCEPALKGQGELLKPDQEITPAAQTKGDLDLGEELVCKMKTSKRSLAAHKAWVTIRANKAKATLAMAQ
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