NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209500_10025432

Scaffold Ga0209500_10025432


Overview

Basic Information
Taxon OID3300027782 Open in IMG/M
Scaffold IDGa0209500_10025432 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3392
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000919Metagenome / Metatranscriptome834Y
F018714Metagenome233Y
F020114Metagenome / Metatranscriptome226Y
F044304Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0209500_100254321F020114AGGAGMTTKPQKFKHISRAIDKDGVHHLDALDEHGRHWYATMQQKEDSWLIYTQQWTLRTH
Ga0209500_100254322F044304N/AMTTLNTTQLCLTDRQTIILGIALANLYDEIAKSGEGQQMRDDIMELSAYVQQQYKEYHQ
Ga0209500_100254325F000919N/AMRFRNIEFRWGETNNKYELVSWYPNLDWQIKETGIYEKKEHCCVVAFFDKTKEGYDMRTVGNRFFEDKDAWVVGKYGLEFLNAIFEIENDEDELK
Ga0209500_100254328F018714GAGGMTDKEYYKTLVVGVIIGASVCILGFYMTKPEPQSITPKSNFAVVDTYKGCDIVQWSDNQMATYKYFLDCSK
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