Basic Information | |
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Taxon OID | 3300027782 Open in IMG/M |
Scaffold ID | Ga0209500_10038249 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2648 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F013413 | Metagenome | 271 | N |
F014620 | Metagenome | 261 | N |
F032279 | Metagenome | 180 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209500_100382494 | F014620 | GGA | MFAPSIGLGGTYERPAINRDIVIIAREAKQTSVDAAVKAKPKTGKKRQRVHAYLLGRPATDEEIETALNMSGNTVRPTRGTLVKDGHVIDSGIRRLTRAGNQAIVWRCV |
Ga0209500_100382495 | F013413 | GAG | MTENEYDETFDLQMEREHQETLRRMQEFRLIGEQISKMPDTPPKVLEIEVRYLMGIIKELETRIKDLESEVRRLENWISRG |
Ga0209500_100382496 | F032279 | GAGG | MPTIIKAIIAFALSAIGLGVSQIPAPTEPVMTNQFIERYDAVGGFGQAMATIYRYVPPVTTTTPVKPVYRHGDCSWLPALAMQAGWSAEQIPQLQKYALRESGCCPNRAGGDNVDKNCNITGVSDWSHRSDSGLMQINGVHWMPTHAQYDGLICKQMAICTQEPLLDALTNLRAARLIYNQVGWSAWDICHQEKNCK |
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