NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209500_10060254

Scaffold Ga0209500_10060254


Overview

Basic Information
Taxon OID3300027782 Open in IMG/M
Scaffold IDGa0209500_10060254 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1991
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062551Metagenome / Metatranscriptome130Y
F078206Metagenome116Y
F098565Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209500_100602541F062551AGGMKKLLAVLLALVSSQVFAWEQRAPNPVQACAVHSPYGFAQTQRTAQPICREAYLVAYDAPVKIPVYVAYTLLPQNALGCFPRTNA
Ga0209500_100602542F098565AGGAMTIRTLISKAVMGTVGDYIGHKGEISFDPVIGALKLSNGVTPGGVSITEPTVISVSDNRWYVDPARTDINPASANGNTTNPFLSITAALAYIEARIADGSLTINISGAVVDNPQFIILKSSTTEDLALTRGNIFICGDTPDAGHVPVWIDGHVTVTPSDSSGNAINVNRFGLFHIAVRTNVAYHSIEVTGSNPVKIYLQDTYCYQGNATKSCVYADNTGTGSKVEIYDCTMARAGGSVYLIDIQRGICSINNLETNGQGQVLNQANDSSGTMLRSTLDANTGSVITLSGSVQWGMGEVILNNTSAGANVYGVNLSGTASMQFGVCTFNIPASPASNRAINGVSGNVVLYADPIFQYGTCVKISTAITLLPLTTAFTAV
Ga0209500_100602543F078206N/AMRIHQLTEAPIAATDNPNDPMIYGHQKANSMTLQGRISQARAQLKELSELAESNDLVVWERITQLHKGGMFMGLEQNLEQIRHGIEELAARRKKGGIPSRGIDKNIG
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