Scaffold Ga0209500_10087011

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209500_10087011

Scaffold Ga0209500_10087011

Overview

Basic Information
Taxon OID	3300027782 Open in IMG/M
Scaffold ID	Ga0209500_10087011 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1573
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029418	Metagenome	188	Y
F049426	Metagenome	146	Y
F082592	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_100870111	F082592	N/A	RTKMIKYKNDTASIDNLEDALELFARNEIWVRITNKAKTDPYGKGLKEAFFKEATNDNF
Ga0209500_100870117	F029418	GAG	MTQHQKNEEKKRKFEEDLIEVAVAEYYQWVEVHQATRSEWNARMFYDAMRLGVIRGINFATNQYMQSIKNFEENKNENKTNI
Ga0209500_100870118	F049426	N/A	MKTKPIYKGYDREIYMSEYVTIPKSRYRRLVISEVVGWGISIFLLLVTILR

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