NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209448_10150384

Scaffold Ga0209448_10150384


Overview

Basic Information
Taxon OID3300027783 Open in IMG/M
Scaffold IDGa0209448_10150384 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)778
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002013Metagenome / Metatranscriptome604Y
F025365Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0209448_101503841F002013N/ALKLRRCLDFISARFPRQRFYTLMSGPNFGEHFIQRLKKSPKLFMETYHKSMAGLERRRSIINLQFMLEMRKLEENDESNFEEEFNVWLSDEPLTNDEICRLMRGVERERKLEGKPPLVQFLAQSKRPKKTTKKPEGHSSRKVNGSPTSDSGVKSAEPGGAHA
Ga0209448_101503842F025365GGGGGMPKKRKPKVASTGDALLSPITAKERRNLDERIKKKYDRFRRRYPEIHGKVVDFITHSIEDGTLYFSVRFTDKTDFSLRYACEMFVIGADFCDFKTGDF
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