NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209246_10002237

Scaffold Ga0209246_10002237


Overview

Basic Information
Taxon OID3300027785 Open in IMG/M
Scaffold IDGa0209246_10002237 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7460
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019994Metagenome / Metatranscriptome226Y
F079625Metagenome / Metatranscriptome115Y
F081032Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0209246_1000223712F081032AGGAGGVRVTHTPFKTKTRAIGSDLEMTLALVGALKNPNKSAFSKLGKIATTLAKLIK
Ga0209246_100022372F019994N/AMSSPVSYDLQGQGGGIVLSTASTTYTGKIRWIQVVNDAVLATVASASGSITGASRLQTITLPAGLGIGGDFSQVILTSGVVIVYYA
Ga0209246_100022378F079625AGGGGGMKFACTRCGSRHWPDPDSSCPLCRDDREEPAEALDDPLEAQEQAIERFTREGCRYESAALWWDQIDKQTDKEQTPETMAERLAWLHGEACRDAWQDMEQSPSSFAWADVCAIAGFDLCKHYRKPKQ
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