NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209246_10002670

Scaffold Ga0209246_10002670


Overview

Basic Information
Taxon OID3300027785 Open in IMG/M
Scaffold IDGa0209246_10002670 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6783
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001538Metagenome / Metatranscriptome674Y
F002099Metagenome / Metatranscriptome593Y
F046906Metagenome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0209246_100026703F046906GGAMYDQETNSQTKETTDRGERQTNAMGDSYGKHHPVSLCFGYGNQLYAWPLGQRSGQRRDIQDDFTRFFYSYRRHDWLPEWYQADAK
Ga0209246_100026704F001538GGAGMIDTIKLFPTVQPSGYPDRHDLAQVKLEKQHEMNKANELAKQKQTELQDLEFEIYTKKVVQERLRMEIFTNRKLDVYV
Ga0209246_100026705F002099N/AVRWLVALVLTLSLQSTGQDLCSVREFYIIAYTIHNPTERHQQMSAWLTKHKTLCKSSDMTVIWNNLSEWAGSADSAELRHKVVQGYKDALKREK
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