 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027785 Open in IMG/M |
| Scaffold ID | Ga0209246_10004500 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5190 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (27.27%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Michigan, USA | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012871 | Metagenome / Metatranscriptome | 276 | N |
| F021113 | Metagenome / Metatranscriptome | 220 | Y |
| F082704 | Metagenome | 113 | N |
| F091602 | Metagenome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209246_1000450011 | F091602 | N/A | CESKELGERVDEVLRDQQLADWDDAYQLVDDDGEIKVCFDCQEWDDADDDAKGEGWD |
| Ga0209246_100045003 | F021113 | AGGA | MNRNILAAILLFIGTSILWLVVCWNWWGCTPKNNVQENVQKQDSVINYNAGEYDRLLQEQIELYKQLRTYEDAQLTAKTTYQRTRSAIVVRDTIYRVDVIRLVNSCDSVIASDSLVIDNLKEQLNIEEQKIDNLQEVVVAYEQKEDVLTEEINTLNADKKKLEKQKKRRNRALVVSSSVAVISTFVLSILL |
| Ga0209246_100045004 | F082704 | N/A | MASSKTKKGICVYLHKDLWNEIDEKRGENSRNIFLSEAIQFSMKFYVEESKVKLTEQK |
| Ga0209246_100045009 | F012871 | AGG | MYGIALPEAQLLQMLHEFIGKHFRWVTFEHFNLAFELNAANELSKKCEHFGALSVVFIGDVLTHYKPHRDKANLQIQNEIAESKEEQSKQLKEKEMAVNDDSWRRMFAEDLHNFKKGKYTVIEIRAVSLMRWLEESKQINADTFTEEEYRLCKANAKKNIYFEQQLVQSMVERMSDRKRMLLKESIRFEGMRELYKLYLSKQ |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |