NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209711_10032673

Scaffold Ga0209711_10032673


Overview

Basic Information
Taxon OID3300027788 Open in IMG/M
Scaffold IDGa0209711_10032673 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3047
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)79.2466Long. (o)-150.0613Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009844Metagenome / Metatranscriptome312Y

Sequences

Protein IDFamilyRBSSequence
Ga0209711_100326731F009844N/ADKSFENERQIKLEKAPAYSDDMPYSVKVRKRIQKEVAKRAEAEQKNVDLEEKLAMMEKRTYDIANKSLGNQLSSVSTRLKSAIEEGNTDEQVKLYESMAEIRSQMTKTEDYAARVPQKEKTEKKAPPLATEWVKENSTWFNKPGYRKETAMAYGIDAELTEEGWDVHDPGYYDEMSKRLKSSGLNYFSKSEENTSKDTENVVQKTNRVQSPVAGVSRKKGTSGNRVKLTSDDLSTAKTFGIDISDEVALKRFAKEVKSFSDTGQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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