NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209711_10049177

Scaffold Ga0209711_10049177


Overview

Basic Information
Taxon OID3300027788 Open in IMG/M
Scaffold IDGa0209711_10049177 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2334
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)79.2466Long. (o)-150.0613Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066804Metagenome / Metatranscriptome126N
F086161Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0209711_100491771F066804N/AMPIDYLEFKLNKEIAYEDTFEKDKKIRKEYDEYVKQTKRKEEKMLDKPIYFNVYKVESENPKAPTFSWNGFTVKEDIVIKAGTKIDMTFWGNSTNQNDGKPNPHLKISNHVPREDKGGVSNRDINYPTKEQVAKQDDNYLDDDINF
Ga0209711_100491774F086161AGGAGMNEHKTFVLNTEDTFNKLQEASEKKAETLFRYRKLEKSEKIVLAKLKNELRLNHDKITQVELTDNAYREPRYKEWLIAYTQAEKDFTLSKDYYNNLIALKDMRITEESSARYLINKK
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