NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209711_10110178

Scaffold Ga0209711_10110178


Overview

Basic Information
Taxon OID3300027788 Open in IMG/M
Scaffold IDGa0209711_10110178 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1377
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)79.2466Long. (o)-150.0613Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024584Metagenome205N
F050674Metagenome145N
F060351Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0209711_101101782F050674AGAAGGVDRIVNPLNAIGYSDWGIKRTIREAENVSRWNPWKCHEWMEEARDRMDLDNLFFREYDGAVRRINTYWHMLPRFRHHNPDEFWKRDKVSYPPTYLELMVDDSDW
Ga0209711_101101783F024584GAGGMYFKLVSKNGYRDLVRNARRICVSQLSEEEKSAAFVELYGILKEKLFESTRSLNIEAAYADRCIHWNQRDIDQIKPMTNMRNPWLRFKREFEQCLDGKMPSKNVEIALAWFYAAPYRDDWIAS
Ga0209711_101101784F060351N/AMTRKYDDMVWKILGGMPIEVFDEDDDTVWENETWELVKTRTEGDYKDSRAIGSANLITALNMVHQRLLVDGTISDDITALSHEIFNNILETFTEDKLIRKRPENIRKTFQLIN
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