NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209830_10119694

Scaffold Ga0209830_10119694


Overview

Basic Information
Taxon OID3300027791 Open in IMG/M
Scaffold IDGa0209830_10119694 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1288
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)77.0991Long. (o)-150.2252Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016204Metagenome249Y
F051564Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0209830_101196943F016204AGGAGGMDKEQYVNVLDIKFYVCDEDGNAVLDKDGTVKEFYNKGRLKPLEYLCEDMTVEDLEEVSNVNT
Ga0209830_101196944F051564AGGAGGMSIPKQMLKEWCETYEEAIETLDYLANRSVGTAKEEVREGLEDYFIDNGLMSEDEFKELANEQQ

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