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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027793 Open in IMG/M |
| Scaffold ID | Ga0209972_10000023 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 159316 |
| Total Scaffold Genes | 201 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 96 (47.76%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (30.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Ohio, Lake Erie | |||||||
| Coordinates | Lat. (o) | 41.69957 | Long. (o) | -83.2941 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001040 | Metagenome / Metatranscriptome | 795 | Y |
| F006610 | Metagenome / Metatranscriptome | 369 | Y |
| F013175 | Metagenome / Metatranscriptome | 273 | Y |
| F021016 | Metagenome / Metatranscriptome | 221 | Y |
| F023051 | Metagenome | 211 | Y |
| F025738 | Metagenome / Metatranscriptome | 200 | Y |
| F040622 | Metagenome / Metatranscriptome | 161 | Y |
| F042327 | Metagenome | 158 | Y |
| F090060 | Metagenome / Metatranscriptome | 108 | Y |
| F102573 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209972_1000002311 | F042327 | N/A | MREREFKVDILMAADIAMFLEGLLEAEFNEEFDATEPCTDTYLDQFMPNGFVPRPDLIEALLKCGVVQPFNK |
| Ga0209972_10000023175 | F102573 | N/A | MLSYNVFKPSYANIQISKPLPTDIAEHVLLNSTCHVDHEGFDLNEIEQAYYAHNDIILEHDTTWYKDGDAAKGAHAIIQPWLTQNESSELILDHSQFVFRYPLSGDAANQVKQYAKQRPELLRILSTSFKCGLDLCIDYLTEDRVQPVVHIEWDYNNVQDMLIDVDYVENVLRNTDWNEIISVIKRFNRLSKGSLDAFQQADFRSMLLFGQKSYKLIPTL |
| Ga0209972_10000023178 | F021016 | N/A | MNWIRKIRIGFLHAKYHRNLKRAEAARIDRDVVKFKKYVYQAEDAWRKLVILAEKTK |
| Ga0209972_10000023179 | F090060 | N/A | MGKRSVYTGESAKDRSVNLMDKFITKNNNKAKQHPKLPGRRKDPNVPLELWPLKDQIEYWENRTDADRFDEEYSCYSTWYDEVKRKSGVYPQTFIDFTSKLKPEMRAMWENKVMPRHAVMELRKKGVY |
| Ga0209972_1000002343 | F006610 | AGG | MAYYKFKAKITDDIDDAINIVQMVGKALNEGKTDKASALSNLAAALKKLESARYYIDRE |
| Ga0209972_1000002345 | F025738 | N/A | MKDRKGKNKPAKGFKRLQCKYCDNVSERVDEKADSITCWKCTMKLVNGEILELRK |
| Ga0209972_1000002352 | F013175 | N/A | MDSKTLIQALKRVVREEVRSVIKEELTEILREGLQSTVNEMAQPKKTSNMPGHRNTPSPTSRKPKVQFNENKWASILNETDALVEQGPMAMNSFKDIMNEGMEEIRMTSRDAVNFGAMRQNMKESMGLAPQAPKVMEDPETGKVYEVDPIVQQAMTRDYSGLMKAINKKKGM |
| Ga0209972_1000002361 | F023051 | GGA | MIRLKQILREISDSDIQRCLKKIQNNAFRLIGAGDNGRVYEIDGEDKVFKITKERDEYEVAKRIVNRSDMFTTFIPVYYVDGKNMYIMANASELSTRIKTSIDNFMQDYAVFARENGGEVSIFDFVAETDTIDLVVDNFLNALKTDIEKLDIPEFDLDLDFRSDNVMSWNGNLVMVDW |
| Ga0209972_1000002378 | F040622 | GAG | MMQLHLYSVKMENVGYNMKTPNLKFILETILEDKPQPMSREEKQQFVQEVANFSAMGESVYGKGDLEEIVERVKRIVERAERIMTESDDWASNQAHKKYFKRVSEDYRDFENAAREVNEAQHRMALAYESIGQGLNKYFDVN |
| Ga0209972_1000002383 | F001040 | N/A | MAVPRNKYSMQAIIRYDGRLVDVLDRIRAIRLVLMVHIEQDLGPDKELITLKVMTPYPARQTFQAIRKMCLGKIETLKDMTLRESTLTKLF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |