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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027793 Open in IMG/M |
| Scaffold ID | Ga0209972_10000514 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 38029 |
| Total Scaffold Genes | 62 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (24.19%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (18.18%) |
| Associated Families | 11 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Ohio, Lake Erie | |||||||
| Coordinates | Lat. (o) | 41.69957 | Long. (o) | -83.2941 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006018 | Metagenome / Metatranscriptome | 383 | Y |
| F006260 | Metagenome / Metatranscriptome | 377 | Y |
| F007859 | Metagenome / Metatranscriptome | 343 | Y |
| F009135 | Metagenome / Metatranscriptome | 322 | Y |
| F010081 | Metagenome / Metatranscriptome | 308 | Y |
| F013524 | Metagenome / Metatranscriptome | 270 | Y |
| F020529 | Metagenome / Metatranscriptome | 223 | Y |
| F024047 | Metagenome / Metatranscriptome | 207 | N |
| F038668 | Metagenome / Metatranscriptome | 165 | N |
| F041152 | Metagenome / Metatranscriptome | 160 | N |
| F042296 | Metagenome / Metatranscriptome | 158 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209972_1000051413 | F020529 | N/A | MINNKNIIKYCAKYFVVLTVGAYVFNLCTNLINQKSDVANLLGTALFAGLFIGSLLILRSDVTKLVKNIKSENKENE |
| Ga0209972_1000051415 | F041152 | GAG | MNIVNYIVTNWDNLPKSKFDDVTVVIFKELQNWDEGYGHHTYEGYGVDKDGNVTWCYSSGCSCGGGPDTEIKKDLKTFTVDSGIDLNVDPSTINFKSLEVEFTTY |
| Ga0209972_1000051417 | F006018 | N/A | MKKYKIKTNDIGMCMSVGCDFYQTCTNNSVNMFYRTKHKFEPMLDEGVCLSYSSGKNTKDYSDNCYPNTLKKIYVN |
| Ga0209972_1000051421 | F006260 | N/A | MEKELTIKDRVKNPIVIQHDDLKFDGKTITIPSYYINSICDYIKDWKLDGEKQVDIEDYVIFRNFLYDVQEYKNKGN |
| Ga0209972_1000051423 | F024047 | GGA | MSIVNKNEVVEWLKNVVEKKMVKELNVPNAKVYFSCDRPHPDVILETKNKDGDLQIVRFLII |
| Ga0209972_1000051425 | F009135 | N/A | MKSPSYYLQVNLPPNFDEVDAEMIKKDLMTYIISRNQYGAMYGPKSSKKGITINKVLYRTNED |
| Ga0209972_1000051426 | F013524 | N/A | MKTNNEVVSRLREFTNNNCNTTLDPKLCEDIRYLCDEVERYSREVVKANNFMDEDHITIQRYKKKLENCQTKLSNYEPF |
| Ga0209972_1000051427 | F042296 | N/A | MNLFKSVIKWSGIGLFACFAYAATLPEPIKLYVIYTYKFNERVIEKIFIKKDNAQKYCEQFKDNHDYTFEEITVKE |
| Ga0209972_1000051429 | F007859 | N/A | MKKLLIIALLSTGCTSGMYLRYNYNKALETLPPCSQVHIINNRYITYSLVESSTNNVYTSHTNYYRAYYNVDGKIIKTIKY |
| Ga0209972_1000051430 | F010081 | N/A | MNEQIDSIIKKHCFKMQELDQNKSIPMVVKQLDRIVYEMYRELYGLRDIRSNNYYLNSFTADDKKGHCC |
| Ga0209972_1000051454 | F038668 | N/A | MNSKISLYELLKRVVDKERIKKAYKFFINKLNLPSDKIQLKFGLLEREVQAKVKVEGEGKPFIVKKYTVIMRTNDPYSSDDQIRSLAHEMWHIKQVEDGKLNTFDNSWENVVYPNYDDTDLRYKSLPWEIDARINSDQLLLAYNRYAREKGAGSKIIKIK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |