NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10000599

Scaffold Ga0209972_10000599


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10000599 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35861
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (90.20%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000368Metagenome / Metatranscriptome1223Y
F002301Metagenome / Metatranscriptome573Y
F017468Metagenome / Metatranscriptome240Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_1000059910F002301GGAMEQSYLSEYDTLVASLAIEYHRRYQMVEALDIQQMLWLWFVTHPNKYSEWSALEQKDKDKLIAKSLRNAAISFCEKEKAKVSGYEILDLYYYDSSVVEAFLPSIISESYEIPQKIKDLNFKFSKGETNDGNNWLVLRSDIAAAFYKLSEAKQNVLRIRFSADNQEWSALAGELKTTADGARMKVQRAINSLIKNLGGFRPYYDNDGPTEKADDIDA
Ga0209972_1000059943F017468N/AMKHWEAHPEFVEGCFGCKGLTLSMNAGDADSRRVTPNKRFNKELDAYAEARANGIQPAGTSMQKIQEAVKASETLGRPYDAGKMPPAKHINKKSVEVMKELGV
Ga0209972_100005996F000368AGGAGGMKINEQFKQVALTWFRAAASAAIALYLAGETDLATLGTAALAGFLGPVLKWLDPSAKQFGRRK
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Institute for Fundamental Biomedical Research
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