NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10001032

Scaffold Ga0209972_10001032


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10001032 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25605
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (88.24%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025745Metagenome / Metatranscriptome200N
F088888Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_1000103221F025745N/AMVSGIPTLGVSFGISGSFTAVSADLILSVSIRRGREQQNLFLESGTAYVILNNQSGAFDPSNTSSPWYGVLTAGMQVQISGNGIVLYTGYLEDNAVDQGIYPTVSLTFVDGMATFGKTMVPALATSQYQETAAARAGRILDLLGWSAGARSLTGTVQMLPTTLGLAGMDLLEQCANVIGGRFYVSRTGVATLVPLANKFSRPTQLLFSDQGDANSVKYDGITTNPGTDYVYNEAVIFRGPGELQVSAKYGPSVSTYGLKSKKVDAPTNTTAAATNLAYYVARKDADATPFAEQIDFSAINIGALATDFLSTELFDMVTVKRQTYDGRFLTYNCVVEGIAMTIDANNWRVSYFTSLVDPYTITI
Ga0209972_1000103228F088888AGGMKLTKRGKRVRAVTILAGIIALYYISTHLWWVGDHYCWGTLLECMPGEFNE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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