NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10001392

Scaffold Ga0209972_10001392


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10001392 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21244
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (25.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006181Metagenome / Metatranscriptome379Y
F012446Metagenome / Metatranscriptome280N
F041760Metagenome / Metatranscriptome159Y
F082581Metagenome113N
F085371Metagenome / Metatranscriptome111N
F101030Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209972_1000139212F041760N/AMTKVLAVKYPSSVDRVKQSFDHLRQVFEVPDVSKIKDMFATLLFDESTLFRYNYCLVRFDNKLYVIEPVDLAKCTYVRKQVEYHPLSNMI
Ga0209972_1000139223F085371N/AMIDFNMTIKVTDIVYDTTDNEELYLNMDLPTELVFDIDGDSDDIEYEIVDAIGDITGWTVKSFKWSEVVE
Ga0209972_1000139238F012446N/AMKKLQKEFTANYDRVGMNRFVQLRKENGVAIYERFNTDDTHRTYEVFIVKVVPKGAPLPNGKTVEESYEQYPGANAFGKTAYDCRSLARAEERFDQLVQKVKDSAEAKEESIKTGKRNRGKRGTNKINVSVPEKDSKFTMKMLITSTGLTQPVLFSIVKSWMNSGIVKINGYIKSEGGRGRPSIEYVVV
Ga0209972_1000139239F082581N/AMNDINTNSNVTATSTKITAKVGRPAMSLKLILNKTFSLKDLQALNPDVKPVTIRAAVLRGLENGRFTKLNRTVRSGRKGKPASLFINTKVYEANLRNLAKSKVTVNVAETDAVTA
Ga0209972_1000139240F006181N/AMKKNIIQVLYLDEAVYSFVVTNDLSVEDNLERTFAEWNHGSGMECEMFINSKKRSLSVNDIVCVNGTYYQCRPFGWKKVTVEYVNELEKELSQHPTRHAYGTWYALTEIMYGRRHDDNEALLEGVETV
Ga0209972_1000139241F101030N/AMTLQQFQAAFAIAKDFDRDLSKVDDSILYGYGLSTFKPVHTTLEAVAKTIRWQALMMNGEWDAEALNEVAEAGRRNFLVLG
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