NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10001798

Scaffold Ga0209972_10001798


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10001798 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18172
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (65.22%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F005092Metagenome / Metatranscriptome412Y
F005745Metagenome / Metatranscriptome391Y
F013526Metagenome / Metatranscriptome270Y
F015730Metagenome / Metatranscriptome252Y
F023106Metagenome / Metatranscriptome211Y
F029721Metagenome / Metatranscriptome187Y
F048943Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_1000179819F023106GGAGGMRIRRMMTEEEKVAKNIGDVVSDLRVDLERVGEYIATSQPYVVYNRIQVIAEAAKETKEGTNYARNNF
Ga0209972_1000179823F005745GGAGMHTDFNPDYNLPEHLQHMIDERLPALDIIHGEMKNWMYEAQLQLEEAQRIEEANDYDDAMESMERKYWEGQCDALAAVYQLTYQLSFALDEK
Ga0209972_1000179824F048943GGAGMSNYLLEYMRIHLVSIEQDQAAVSEQMEALDPNSKDYAELDFEYNWLGGQIIATRHFIQIGEEHAH
Ga0209972_1000179837F000808GAGGMEYNYAITISYDGELYADFKTADMLEAVDVWNKCVDFGNAKEYATYNLSDPTGKMYTKTFYRNGKVAIK
Ga0209972_1000179839F005092AGGAMDKLEYALRQIAACNFCNGRGVDYFGNGEDYDFEDCLCNPYGLILDEDGSVIFDNGLLSEPELFATMEAN
Ga0209972_1000179841F013526AGGAMKKNVLISFITESDTDLGAVFDLNKVFLALPESDLVKFDVFDVLDVEENK
Ga0209972_1000179845F029721N/AMRSYSIEDLLVGQFYRPTSFARKYQGGEINYATKRDDVWVGTEYQAYSIRFNGHKWATIAVRVSDL
Ga0209972_1000179846F015730AGGMLTEKTLNKIVYEYQHGGVQNYHPEISLSERKALLKYLWSLPSKCAPECEANHTA
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