NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10003277

Scaffold Ga0209972_10003277


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10003277 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12721
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (23.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006590Metagenome / Metatranscriptome369N
F025030Metagenome / Metatranscriptome203Y
F064723Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0209972_100032772F064723N/AMFISQAKLNRLKRLEGKTNKKGQPLAISNFANSVIELDNIMQQITITKRKEITKAAEPIALAAYRNLVPNSNKLHKFYIKGKGLKYNIMPGNLQRSIQIVSDVKNFKYLTSAIGPIYKDAGKGVTLGSDSKSDGFYAHMVYGSTKAWVKKVKNQAERASQMAVISKMSSEAMLMAKQYPRKFWEI
Ga0209972_100032774F025030N/AMKLRLLKEWNGKAPGKVGVFLSEYGEQMIKDGIAELLDEDFVVEQMPQKEETKQDPVYIPIPVPNSYFNEEADEEKINKPKNK
Ga0209972_100032776F006590N/AMKTITIANTSIPIKFGMYVLGTFLRERKLKLSDLSLLGEDLLLALELAFTGVEHGYKAKGDKCPYTLQSFCDLVDTDMGGITRIMEMISNEISPPEDESQKNVVAKEENLPLSTSNAFVSEF
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