NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10003668

Scaffold Ga0209972_10003668


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10003668 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11954
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (63.64%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029721Metagenome / Metatranscriptome187Y
F037190Metagenome / Metatranscriptome168Y
F084246Metagenome112Y
F103128Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_1000366812F103128N/AMNSARLEFQNYYDDQAMATGALRWMVHRLEKELGNCHGVENGTCYFYWKHEDCNRLMALLADLTGNDKYLPKPTKGSSWD
Ga0209972_1000366817F084246N/AMDKIEDTSCYSYKVEMIVQVFAADEESARLQLDDKGGYVTTRKVRLMDSVPIYNGVKK
Ga0209972_1000366820F037190AGAAGMDRYLLIELGSDGIAFETAQFDFYASWLGIGIAIVSVVAYKIIRIKKGK
Ga0209972_1000366822F029721AGGAMKTYSIEDLLVGQTYVPRSLARRFQGGEITFAEKREDIWLDGYDAYAIRYRVGQSIKQNWATVAVRVAD
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Institute for Fundamental Biomedical Research
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