NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209972_10008645

Scaffold Ga0209972_10008645


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10008645 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7028
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015719Metagenome / Metatranscriptome252Y
F022871Metagenome212Y
F029029Metagenome / Metatranscriptome189Y
F056346Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0209972_1000864512F029029AGAAGMKTMTQEPKEIKDLFKKDYSRAMDLRGNPIGDICVCGSELFTAIVAFEYGEIAFYFLDGECVDCGSLVTLPTPIDNIGMD
Ga0209972_100086453F015719AGGAGMTMYYSEVDGTEPTISIQVKDTKYTFTNESLARLIEDKENIKTELLQVERKLKSTQFDVKEFFQARYEPDESEILCEVGDVNDLLTSIGSEQLTKSWSATVTITATITGIEAANQEAVEDIIKDSIDVNFTEDGDLWVDDIEVNGVHPES
Ga0209972_100086455F056346AGGAGMSSTEAPISINLKTAGGTQITLRAETADQFADMIAQGIHIITDAVTEVELAVKGTSANKPMSVADIASSFNANIASTESGGEETVEDKWGNTWVYNKPGAPTCERGVMVLKYGKAQATGKPYKAFYDPAAGPRWNGPKVPTELRTKPIFA
Ga0209972_100086459F022871AGGAMSEFENAWETDEEFWEFVGDNRKLVGIAISDGQGLDILNALKDIYTTIEKEPESAMRMLTLLGTVIYASSIGEGKQFTDEIQVVSAMEQFDTSMKEILDEESR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.