NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10009508

Scaffold Ga0209972_10009508


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10009508 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6615
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018703Metagenome233Y
F020494Metagenome / Metatranscriptome223Y
F022400Metagenome214Y
F024719Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_100095081F024719N/ARGKITIVFYEVSDSQNIAIWGGENPVEALKWYRNSPAGSKIWVSQYEVDEEDAELMLDSVEITPIVLATITDSIDRWSR
Ga0209972_1000950815F020494N/ATGDVIDWKTVKVKNLSYFPSLQQRWQVQVYGYLLDKSGKGSPRTVNLVAIARDGDERDVKVHSEPYDPKLAEDALNWLSAIKESADAPGPERDQSYCKFYCKYFDESGEMGCTGLKKERIKEDEVFIDNPEVDTSALKYLQLDAKIKELTTERESLKAALEGFTGSTNSGVSITWSTVSGRESVDTEEVEKLLGFVPKKQGQESTRLSVKHTGGK
Ga0209972_100095082F018703GGAGMKREVEQRIETAKAQAVRQRNYRRARDRALARLSNDYPNVYRTYLEEEMEADESMGKKWLDITGNTRSANTRSS
Ga0209972_100095083F022400AGGMRRTTIERSQRPTLRLVSGGVGERASAYSPFGPVRAGLITTQRTSEDQVLTELLNSLERKIVELSIKSCEVLNIFLSDTEHLARRTGSSSRTDITDSI
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