NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10014774

Scaffold Ga0209972_10014774


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10014774 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5025
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001900Metagenome / Metatranscriptome620Y
F005054Metagenome / Metatranscriptome413Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_100147744F005054N/AMAEILINSQSPITHQIFWNGDVGTPDALPVVKIYDVTNDPAISPAISPTQILATLISSPDENNPGTYVINIPYQYTDRNKTLRLRWSYSIDSTPVEMYDEVYVITPYVDFNHVQDLGFSIDSSDPQYRSYKELVRAERYARKQIEQYTGQNFYLYDDVFIVYGYDSDTLTLPSRVAELHELYSADTLLIDTLNDINNWGYDVILSESGYGIRINRQNLLDNTVYTANGMIPPSINDYGYGVFKSGIPYKVQGKFGWEKVPDEVELAAIELMKDYFNKDTVWRNKYIKKISTFDWDFEYTGEAHTGTGNAYADRLLADYVLTAKVEII
Ga0209972_100147746F001900GGAGLDNSNLLVQASSGLERLMGGSGPGGTLKDSTVAQVSAYIYYQANVIAKLTSSKQFQNAFTKTIFDQINDDFGNYVDALARTRPKSLHHVYEWKKVGNPTARLFKINKISEQGLSFRINYEFKPSRSMVPTGKGKRRHMFINKAAVMEEGLPLVIRPKNAERLVFEYNGETVFMPKGAPVTVKRPGGSAARNQFALAYSRFFSGQLVNTSIKNSGFQSLFNSRLTKAMKLPSNIKKVQYKFSPNIVRSQADSALALAFGGAL
Ga0209972_100147747F000258GGAGGMTANYKLDAMLELRKYLWDQLSSRNIFDENDYWSDNLNENIVPIIPVQQSAEMNQFLSGKKHIVYDKVGMSYEDNWLICCEQIMLTLYSTSISDINEIRNYLTDEFRRMDESARDINKWSGLSDKFKFHTIWVADISPTAPSEELQGFFAAEVILEIKYSRITDGQGRFL
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