NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10015154

Scaffold Ga0209972_10015154


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10015154 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4942
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F011938Metagenome / Metatranscriptome285Y
F013878Metagenome / Metatranscriptome267Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_100151541F000671GAGGMEKILCYSCNKTKHKLEVKKSTLLPINLLMCEGCISAKLEPRWVIILAGRSNGHEFVREAIQKKKY
Ga0209972_100151542F011938GGAGGVKEYYEVVNIVYIHELQCYGAVENMGAFASTVRYTIEDGTEIEELMENDEFTIIDEIVFTHIEESN
Ga0209972_100151543F000473GAGGMFIDKSSEKQKEYFKHGINQWTGEPNKPVFYTEEMKKRVHEIKKPSMLLMDVVMYPDFLALRLYEDNFIQFDGIKKEMVIDYVSKVKKLIESYGVRCELEGKPSERIL
Ga0209972_100151545F013878AGGMLNLTELGVEVFIKRAKNIAPYWDNYDLVIWKKNAQGFTDVKGLFRNNSWGIAEKFSVGDNGMWKLPVKYVKHFK

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