Scaffold Ga0209972_10022284

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209972_10022284

Scaffold Ga0209972_10022284

Overview

Basic Information
Taxon OID	3300027793 Open in IMG/M
Scaffold ID	Ga0209972_10022284 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3838
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031405	Metagenome / Metatranscriptome	182	Y
F064508	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_100222844	F031405	N/A	MMIRIYSSSKKKKLTKKQLQEQQDFISSINKIPLPSGGRFPAAAPKKIKDKPLTPSRVVRSTKHIPSLPDTHKGALTKTGIMKDFHKLSSSDREIVADVASCTAPMHKGNYVYVTPGMNPAGLGRKNEVL
Ga0209972_100222846	F064508	GAGG	MSKFKAWVVDKYLQLEQQAVEAITTANFYGNLFTERQKFYIVAFFMALMALAGAYGAVQFIGLVYIMSKMTPEDKDDEK

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