NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10038416

Scaffold Ga0209972_10038416


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10038416 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2700
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F002207Metagenome / Metatranscriptome583Y
F007470Metagenome / Metatranscriptome350Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_100384161F002207AGGAMPNWVYNTLTIQGPKEEIDYIKDRLNRPFTLAQETFGMGDISLSGFPTKIEQVTYSNPVFAFFNIHSYKDEGITDEEYARQPDRGNIDMKDPDWFIKSVEHAKTQKDWYSWNNSNWGTKWDV
Ga0209972_100384162F000450GAGGVGDRANFGFVQPNGNTIVLYGHWAGHQMLGKLADAVIAARPRWSDPAYATRIAISQIIGNDWSMETGYGLHVNEISDNEHKIAIVDWDQQTFSLHEQDDFRNTANKVRGMKNEAIFTMDLSTFCEKYALEGMLVN
Ga0209972_100384164F007470AGGAGMDYQDGFEDGVKFAREVIINNIRLWAESSDEGQVYDDIADRLEFGKVDYDL
Ga0209972_100384165F000311GAGMYFELTAPNQVALQRAYWSAEMMGLDPQLIAPLTFNIGTGSIEKVSSIRDTYNLKETYVSDYEPTGYTRR
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