NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10060873

Scaffold Ga0209972_10060873


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10060873 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2013
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F018349Metagenome / Metatranscriptome235Y
F031384Metagenome / Metatranscriptome182Y
F047643Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_100608732F047643AGGAMYYQLQAPTGAACKAAYWEAEFSGLDPYYLESNVFELGTGNIEKVSALISKYNLDILVESDYQPTGYTRR
Ga0209972_100608733F018349AGGAGGMDYKDGFEDGVKFTREVIINNIRLWAESHDDGAVLDWVADKIEFGTLDHDL
Ga0209972_100608735F000450AGGAMGDRANFGFVQPNGDTIVLYGHWAGYNMLGRLADAVIEARARWSDPSYATRIAISQIVGDQWNEETGWGLHVNEIGDNEHKVAIVDWAQQTFSLHNEDSFHNTDNKVRGMSNGAIFTMDLSEFCEKYAINKLLTV
Ga0209972_100608736F031384AGGAMPNWCYNGLTIEGNPDLVNDLVKQMNKPFVMLHDSWNKTTGNMEVSQTTYPNPVFA
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Institute for Fundamental Biomedical Research
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