NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209107_10000015

Scaffold Ga0209107_10000015


Overview

Basic Information
Taxon OID3300027797 Open in IMG/M
Scaffold IDGa0209107_10000015 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)105059
Total Scaffold Genes208 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)98 (47.12%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Associated Families10

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007265Metagenome / Metatranscriptome354Y
F012341Metagenome / Metatranscriptome281Y
F015080Metagenome / Metatranscriptome257Y
F017641Metagenome / Metatranscriptome239Y
F020907Metagenome / Metatranscriptome221Y
F025022Metagenome / Metatranscriptome203Y
F027828Metagenome / Metatranscriptome193Y
F048940Metagenome / Metatranscriptome147Y
F073557Metagenome / Metatranscriptome120Y
F099268Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209107_10000015106F073557GGAMTDAQICEMVNMHRYLMMCEIKHAFHKFCAENGNQDYSAANRSEAFNDKEWIKFAQWFKDIRDE
Ga0209107_1000001513F048940N/AMSVAQRMERQFFLSFIDLINEVQGKQKLPSQLNSNRKSSWMKQVSNPRQKKDALALV
Ga0209107_10000015134F020907GGAGGMTDEQLLNSLQGTMATIDPYSVKKEALDEYRIDTIEERLTRIEDKVDLLITQLKIEFYKKNDGTSR
Ga0209107_1000001518F015080N/AMFDLLNFQPHLNGIPNAIAARHVFENDWEISVVAGPPNCGLYGNINENTYEVAIIRPNGNMTEDVNGWNSKEEVSAMMWVLSQL
Ga0209107_1000001532F017641N/AMHTMLFHYTTNWKEGKVNQMWIEEIEESYDVYKYVAIAFNPEKNVSMVMSNPRGYYDTLQWVRKFCGSFCIL
Ga0209107_1000001537F027828GGAMMELTTETMLDKVLMIEDILTEKQLLVLQDMLYVYKDLQEVVHNYPEPDTLFTQTQRDLFNLFDIK
Ga0209107_1000001561F025022N/AMKELTVVSIKREDGLYHFNHSHQNTVEEILCNGTEEAIDEHCYFKTGKYPIEGDEVEISLFLEEPDDYDTLLVKEVSDEDGTTYTDTTLCCPVWLCNWLQGFFGEVPDEIYIKVRPINQGLEAFVKNTGMKGLLNK
Ga0209107_1000001593F012341N/AMKLTIDELFDMVAKTIAEPHTIITEHDKRRAIRVFLYLDEFMMENVPEYCGDTALGEIDFGSYAAGILDELEGK
Ga0209107_1000001596F007265N/AMTFQPYNIVPGTQILHSTTDCYEYTDEAEGMTYRVELQADNGGVYIKSGERGLEEGSKNITEDMSIGNKELSIVVAKRILELYGVN
Ga0209107_1000001597F099268N/AMLLLDRYNEYYNDTCAGLPHGGPISMEHLQSLALKSAIYAFARKYGMKDSIPVEDLNNLADLIEAQGNEFLKRTETLMKEAHERPGGDLDAL
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