NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209107_10001826

Scaffold Ga0209107_10001826


Overview

Basic Information
Taxon OID3300027797 Open in IMG/M
Scaffold IDGa0209107_10001826 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11902
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (75.76%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F012975Metagenome / Metatranscriptome275Y
F037227Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0209107_1000182618F037227AGGMANMTVLEGIIDDVATELYQKLWNAIPVEEQTEDSSKAIGLNSRETTIFVIQSFMNKFNAAAEDLKDK
Ga0209107_1000182623F000671GAGGMEKILCYSCNKTKNQLSVRRSSLLPINLLMCETCTSSKFEPRWVIILAGRQSGSETVRDFVLKKRYVGKDISASELLV
Ga0209107_1000182625F000473GAGGMTFIDKSKNHFKFGVNEWNGEPNKPVFYNDEMRKRVREIPKPTYDLLMDVVMYPEFLALRLYEDNFLQFDGNKKEMVIDYVSKVKRLIESYGVRCELEGAPSERLL
Ga0209107_1000182627F012975AGGAMLYLTLKGVEVFMDKSKTKSQESFWNNYDLVIWKKNSGGYTDIKGMFRKDSWGTAETISVNNHGIWKLPLKYVKHFR
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