Scaffold Ga0209107

Basic Information
Taxon OID	3300027797 Open in IMG/M
Scaffold ID	Ga0209107_10002249 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027797 Open in IMG/M

Scaffold ID

Ga0209107_10002249 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10727
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (61.54%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

10727

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (61.54%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Lake Erie, Canada
Coordinates	Lat. (^o)	41.77	Long. (^o)	-81.73	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, Canada

Coordinates

Lat. (^o)

41.77

Long. (^o)

-81.73

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001731	Metagenome	644	Y
F005452	Metagenome / Metatranscriptome	400	N
F029109	Metagenome	189	Y
F047681	Metagenome	149	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_1000224910	F001731	N/A	MSIFNPVYRVTINGVEYQSSVLANLTITSGRNNIYEQAQAGYINIELINLDASNVDIYINSALTIELQDSTATFVPIFGGSVVEISIAVAELGNVAFAQRIKIIALGALARLPKALTNGVLTQDFDGNQILTILTDLLVNNWGEVPAALQWQTYEPTVQWQDAENTGLGEIDTPGSYELAARSSSRTDVYSLVSALATSGLGYIYEDAQGLISYASADHRSIYLATYGYVDLTANQAQGAGLSIQARAGDVRNTITLKYGTNSTSEVSADDPASVALYGELAQIFTTTVKHQVDAQDQADFYLTLRAYPEFNFSQITYQLTNPEIDNGDRDALINVFMGMPVSITDLPLNMSSGTYLGFVEGWTFRAAYNEISVTLNVSPLAYSLQAMQWQDVSVAEAWNTISGILDWENALVVA
Ga0209107_100022494	F047681	GGA	MPQIVTAQQLRDILGVSVALYSNAYLEQMIESAELTILPLLTGYQSAVTEIYVENSIAYYGTQRVNYFVPGQSVVITGCGIYDGTVTVTDDRIAPLVFTSATAEADSTYTIPQIPAGLACIDGATAGDLYAGVAPIKSAILVVSVEVFQSVTAPGNQIMSDQFQPSPFILGRSLSNRIIGLLGPFLEVETMCL
Ga0209107_100022495	F005452	N/A	MTIEADIRTPLQTALTSIAANVYNGIPEAMTSPSIVLVPDSPYLESTLINGSTTKVKINFLVTGVVGYSSNAAALTNLEDLMISIISTMPGGYTVGDVSTPTPLEVGTGKFLTADLQVSTYYTD
Ga0209107_100022498	F029109	GGAG	MAFKATKGQGTFRIEVEPYALKNLISTLNALDKETQGRVRDAAQPLSKRLAGQLMQFGGSSPTPQTKLVLLSMLTPRDRLIRVDLGGSKKVGRPYGGTASKSGKGKKVNREAAPAGALLWGSEYGSKSGVDRAGRKYSNRFKAPQNRSGYWINDAVDYYTPVVAKEYIEIVQAIIKEKKL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209107_10002249

Overview

Ecosystem & Geography

Associated Families

Sequences