NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209107_10010928

Scaffold Ga0209107_10010928


Overview

Basic Information
Taxon OID3300027797 Open in IMG/M
Scaffold IDGa0209107_10010928 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5117
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032141Metagenome180Y
F039052Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0209107_100109281F039052GAGGMLDIKNIPIEKINQNRKQNAIFVRMKNQMDVKMASYLRYLGTKNAVNRASDYHYLVLAVTDSTAPVNGIDYIHPTVKPAVDYATAVITKGLVPHGEINFEFVADSEEDEVAARQATDMVSKVVNQMNDPHFIMERWVMDAAMHKNGMMMIKPIREQIVRYVTTEGTADQLLAFEQQAADSGLTAMRQSKRRTSVDLQSALAEIQQNLGEARSAIDEAQLDLMVKNLPLDPEDTDEPMDQPAAVLEAEQSVLTDAINRNTIYTAKYKLTGYNINIKFHPIAQHYWICDPTVAEMREQPFCGYYDPMSIQEALELYPSINLEEFRTHAEYNMNGAYQAGSVLNNLAIHARDSVPVMGIPVSSASSADPDSRQISIVTVWNRYDIDGDGELELVELIYSGSYIISAREVEFIPVANMCPKPLPGNFYGMSIAESVIPMQEYAT
Ga0209107_100109285F032141N/AMQAKEINQSRGPTTGNHNTGSKRADAMSEKSKTGSEKSALADMVTDAVARRGELMRGVRDPAVEPVKATVNVGRGPTKGNAAKQQKSGAARRGALGASSGY
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