NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209107_10019136

Scaffold Ga0209107_10019136


Overview

Basic Information
Taxon OID3300027797 Open in IMG/M
Scaffold IDGa0209107_10019136 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3924
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001106Metagenome / Metatranscriptome776Y
F035307Metagenome172Y
F056615Metagenome / Metatranscriptome137Y
F058150Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0209107_100191362F001106AGGAGMSFETLKVAELRKVAEDFAVDTDGLKNKTDIIATLAEEGVTWSVYQKTIKDIEKAAEEFSDDAEEILPRFNPDSQPENTMLVRMTRENYRYDILNYTFTKEHPFVAMTSEDAQEIFDKEEGFRLATPKEVQEYYA
Ga0209107_100191363F058150N/AMEILVGSNSPITHKVFWQGQLTDSDSIPVVRLYDITEDPAISPPINPGTILATLTAVKSEVDAGTYIVYIPVEYTTRQRQLRINWSYTVGSVSTQKDHKIYVQTPYTDLSQAIDSLGLGSDFSDPNSKSYFELCSAERYARKLIEAYTGQQFYLYDDVQIAYGSGSDVLPLPYKLAELHELYQNDILLINTLTNINNWNYNTIISESGFGIRINRANMLDNTVYTANGMVPPPMNDTWNGVFANGSTYRVQGRFGWEEVPDEVDLACIELMKDYFSKDKVWRNKYMKSIQTFDWKFEYNSGIYSGTGNLYADQILLPYVINKMVVI
Ga0209107_100191364F056615N/AMYDLVDSVMPMFMDVYKQFDLQDLDTGSIKKEWQFDRTVPCSAKGNISNSSSSRSGDRQVMSNKYINEQILQIRTSEKITLREKITNIRDTEGNVIWEELNFPSNTPTVYELIGITPMVDPLGGVIGYNSTVKRSENQTIGQ
Ga0209107_100191365F035307GGALDNSSLLVTAASGLQKGMAGTSGTILKDSTVAQISAAIFYHAQVVAKLTTSKAFEKKFQSVIFKQIEQDFGLYVDSQSRMNPKSLHHVYEWNKVGNKGARLFNLSILSTDGLSFKITSSFSPSKSSVPNEFGKRKHVFINKASVMEAGMPLIIRPRYAERLVFETSTGVVYMPKGASVTVTRPGGGKATGRFKIAYAQFFTGNLVNSAIKKSGFQQIFNSSLTKAMRVPADVRKVKYSFSPNTLKMQADSAVQSAFGGAV
Ga0209107_100191366F000258GGAGGMTNYKLDMMIDLRKFLWSQLKSNDIFTSTDYYSDNIGQEIIPIIPVQQSPEMNQFLSGKKHIVYDKIGMSYEDNWAICCEQVLFTIYSTDVSEINEIRNLMTDLFRRMDESARDTNAYSEISKKFKFFSIFVADISPTAPSEELAGFLSADVVLEVKYARHIGTNGRFL
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