NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209107_10020106

Scaffold Ga0209107_10020106


Overview

Basic Information
Taxon OID3300027797 Open in IMG/M
Scaffold IDGa0209107_10020106 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3827
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001008Metagenome / Metatranscriptome807Y
F002869Metagenome / Metatranscriptome524Y
F011276Metagenome292Y
F095464Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0209107_1002010613F001008GGAMSKAKHKPYQWIDGESADRITSLNLKDYRAYLKKELAQWRKNPKTEDNPDGVWLHPDDVTGNIRRIEALNLIINDFIQTEDTIK
Ga0209107_100201063F095464AGGAMTPREQSFCYLKQYIRAQRETPWIAKINAVEDRARCALQHLGGMSGDWYPYRPHECHYYYPQITTK
Ga0209107_100201068F002869GGAGMNNEITTEMLDRTMAWCQQNAFWGTPSAVPKVLDFYFEKTRSTVDEDWPESFTLEELAQALGIEQVRYRTYYSQDNLTLRLFVFRPHCTWDEQKIMLDMGFVIAQDGDSDTIPDQPIEEGVEE
Ga0209107_100201069F011276AGGAGMIKGLMGEKGIVVGSGNTSVPYINQNQSNPMQGMIRVWGTDMQVFDGSAWMNIATSYATVSLDQETQDLLMWAKAQRVMAMNRLTLAQNNPALMKALEKLKKAEDNFELLSKFVEHDKERHEAMTTLGMCP
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