Scaffold Ga0209107_10022089

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209107_10022089

Scaffold Ga0209107_10022089

Overview

Basic Information
Taxon OID	3300027797 Open in IMG/M
Scaffold ID	Ga0209107_10022089 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3651
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Lake Erie, Canada
Coordinates	Lat. (^o)	41.77	Long. (^o)	-81.73	Alt. (m)		Depth (m)	20
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002269	Metagenome / Metatranscriptome	576	Y
F007027	Metagenome	359	Y
F093523	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_100220893	F007027	AGG	MTELIRFECRRCKKITEQLERIVADNLPPNVKTLQCTVCGCMSVCLLVNYDDA
Ga0209107_100220898	F093523	AGG	MDAQAVIAVVVGLLAILSALYMGLRFLVKSILAELLPDNNGGHNLRGRVDRIEVKVDKIYEMLIEAKLAR
Ga0209107_100220899	F002269	AGG	MKEQLTAAGLSYLRHAATCAAVLYMSGITDPKVLANAFLAGLVGPLLKAIAPNEKQFGVGAK

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.