NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209107_10060517

Scaffold Ga0209107_10060517


Overview

Basic Information
Taxon OID3300027797 Open in IMG/M
Scaffold IDGa0209107_10060517 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2112
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000980Metagenome / Metatranscriptome814Y
F001125Metagenome / Metatranscriptome769Y

Sequences

Protein IDFamilyRBSSequence
Ga0209107_100605171F001125GGCGGMGDRANFGFKQSNDNTIFLYGHWAGHGMLERLANAVEAARPRWTDESYATRICVSQIVGEDWTQETGWGLSVNRILDNEHKIPVIDWAEQTFTLMEEDLQTVVFSLSLDKFCTKYSQLVV
Ga0209107_100605175F000980N/AMTHYQKYTWVCTGDCDALIEYTMKDGFGWPSGVMQLTCPCNSRCTLVSVEDATIPYTDSPLPTEEETMETETPAVTVPNTYNANLLVTYKVIHGYSDAEYATDKVASIEWSLHNGRQAQKHNGVLNGKIDAVKEIICEAYADSGDQDTLREIAEALDIELIKEVEFTASIEVSGTYSYNILENDYDLDLESEVTDALFADSNHGNIEIGDQEVCNVREA
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