NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209107_10120054

Scaffold Ga0209107_10120054


Overview

Basic Information
Taxon OID3300027797 Open in IMG/M
Scaffold IDGa0209107_10120054 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1380
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055683Metagenome / Metatranscriptome138N
F064669Metagenome / Metatranscriptome128N
F099193Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209107_101200542F055683AGGAGMAQLNTTEQILQYAREQQGITQQDIVGGSLYCELIDADQAEWFRKDLQEKVNSNTEVKMYALGRGINRDRQEYVYDFVPKTQTEIPAEVEQMIELEAEIARGK
Ga0209107_101200543F064669AGAAGGMANSRAQHPVEQWVQHITKTTPDLILGTLQHADLALAQQLAHEMQRRGLTTQDILRLKNRKQPVSTT
Ga0209107_101200544F099193AGGAGMYIMMDESRLKRAFTEENLTAWAEYRAECHRANYYFKRDGWSEGTLWDWNPDKKECTLQLRWGDDQNNHEQYSHLEELDEQEYHRQYDEYQLSVKLTDLVR
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