Scaffold Ga0209107_10266030

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209107_10266030

Scaffold Ga0209107_10266030

Overview

Basic Information
Taxon OID	3300027797 Open in IMG/M
Scaffold ID	Ga0209107_10266030 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	819
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Lake Erie, Canada
Coordinates	Lat. (^o)	41.77	Long. (^o)	-81.73	Alt. (m)		Depth (m)	20
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000868	Metagenome / Metatranscriptome	853	Y
F053291	Metagenome / Metatranscriptome	141	N
F096665	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_102660302	F053291	GAG	MITTQELIDYMYDDNLAHFDDRDTSDDCDCHIHITLQTMIKYMEAIEC
Ga0209107_102660303	F000868	AGGTGG	MSFLENENEMVIDATYSEIGEMLVEDWVNANLDEGQLYADFRFAEIADSNYLKGRFNLFYDLNPGDQYYLECEEE
Ga0209107_102660304	F096665	N/A	SESEYDNMCRDCDATDQMEYCEEDCGEICGNCNWLGEADLDAVAKCQTHKIYLETKVPEYRKVGTK

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